I would not think that
proper cleaning lowers their value. (see the links comis provided)
On a used knife it may be necessary to remove dirt, rust etc. just to see what it is.
On a new/mint knife with little dirt etc. on it, cleaning it may remove blade markings or scale markings and affect the value.
Sharpening should also be avoided on mint knives as the "factory edge" is a bonus.
Also, you need to be careful with the cleaning materials you use, so as not to discolour the blade and scales. Some materials, like wood, carbon steel, older synthetics will need very carefull, cleaning.
Definitely, any damage, that can not be attributed to a historical event/person (e.g. "the knife blade was damaged in the stabbing of Julius Caesar") will lower the value, but a lot will depend on how desirable that knife is and how many better ones are available.
Some older knives with hardly any blade remaining sell for silly money, as they are in very limited supply.
I have bought scratched and damaged knives and SAKs for silly money, a while back, as the mint ones were seriously more expensive or impossible to get.
Also, vintage is a relative term, it may mean 10 years, it may mean 100 years on eBay